zebrafish – News /news Fri, 03 Nov 2017 18:27:44 +0000 en-US hourly 1 https://wordpress.org/?v=7.0.3 /wp-content/themes/b/bates-framework/styles/images/bates-favicon.png zebrafish – News /news 32 32 Summer Student Work: Students in Larissa Williams’ zebrafish lab among first to use innovative technique /news/2013/07/23/chip-zebrafish-larissa-williams-chromatin-immunoprecipitation/ /news/2013/07/23/chip-zebrafish-larissa-williams-chromatin-immunoprecipitation/#respond Tue, 23 Jul 2013 19:00:00 +0000 /news/?p=66953 James Meyo '14 and Jenny Chen '16 are the first U.S. undergraduates to employ an innovative research technique currently used in only three labs in the world.]]>

In a fourth-floor lab in Carnegie Science Hall, biologist Larissa Williams has student researchers working on big projects involving tiny zebrafish.

In this audio slide show, featuring photographs by Marc Glass ’88, Williams outlines a project now being executed by biochemistry majors James Meyo ’14 of Nairobi, Kenya, and Jenny Chen ’16 of Englewood, Colo.

Under Williams’ guidance, Meyo and Chen are believed to be the first U.S. undergraduates to employ a certain research technique in an innovative way.

The technique, chromatin immunoprecipitation, or ChIP, helps researchers examine how proteins bind to certain areas of DNA strands. The nature of this protein binding determines how genes get turned on and off.

“The novelty of James and Jenny’s work is that they’re conducting this protocol in whole zebrafish embryos,” Williams says. “This is not trivial. In fact, they’re on the cusp of cutting-edge research.”

Williams uses a car analogy to explain protein binding. “The protein is the key to the car, and the DNA is the ignition.” When the protein binds to the DNA, it’s like the key going into the ignition and turning. “The car moves — the gene is turned on.”

Williams and her students will use ChIP to investigate gene expression — what a gene actually does — during the embryonic development of zebrafish.

Besides being a familiar inhabitant of the family aquarium, zebrafish make a great research model, says Williams. For one, there’s the convenience factor. Zebrafish are easy to raise in the lab, and their embryos grow outside their bodies.

Plus, she adds, “humans share 77 percent of our genes with zebrafish, so they are an excellent biomedical model.” The fish also do double duty as a model for environmental research. “The knowledge we learn in the lab, such as the effects of environmental toxins, can be transferred to what fish are experiencing in the wild.”

Chen and Meyo, whose work is being funded through the INBRE Fellowships program, are working in the Williams lab alongside biology majors Dan Jordan ’14 of Washington, D.C., and Allison Tsomides ’14 of Troy, Maine. The latter pair are looking at the production of blood in zebrafish, again from a genetic perspective.

As of early July, the four students in the Williams lab were doing the tedious but crucial work to set up their projects. Yep, it can be boring, says Williams.

“Start over.”

“There’s trial and error just getting projects off the ground,” she says. “But one of the most important things about summer research is teaching students that the process of scientific inquiry will include failure.”

As if on cue, a student approaches Williams reporting something awry with the pH of a solution she’s preparing.

“Start over,” Williams advises. “You’re already over volume, which means your molarity is off.”

Failure, Williams continues, “occurs even in the smallest of contexts.”

But it won’t be long before the students begin generating novel data for their projects. Then, later in the year, they’ll report results in ÀÖ²¥´«Ã½ research papers or senior theses. Eventually, that thesis or paper could get published in an academic, peer-reviewed journal.

“And they will be listed as co-authors of that paper because they will have had complete ownership of the creation of this new knowledge,” Williams says.

]]>
/news/2013/07/23/chip-zebrafish-larissa-williams-chromatin-immunoprecipitation/feed/ 0
Sun Journal profiles bio professor Williams and her zeal for zebrafish /news/2013/01/17/sun-journal-profiles-bio-professor-williams-and-her-zeal-for-zebrafish/ /news/2013/01/17/sun-journal-profiles-bio-professor-williams-and-her-zeal-for-zebrafish/#respond Thu, 17 Jan 2013 18:07:54 +0000 /news/?p=60936 Examining zebrafish can tell us something about us, says Assistant Professor of Biology Larissa Williams. ]]>

Sun Journal reporter and photographer Amber Waterwan profiles one of the college’s newest faculty members, Larissa Williams.

She’s an aquatic toxicologist whose research interests include zebrafish, a familiar denizen of the family aquarium.

The freshwater zebrafish are valuable research specimens because they share a number of genes with humans.

An assistant professor of biology, Williams tells the that since zebrafish share similar genes with humans, the tiny species can help researchers in their search for clues about human diseases or afflictions.

For example, when one zebrafish gene is “knocked out,” or made inoperable, “the swim bladder does not inflate,” Williams tells Waterman. “In terms of human health, a lot of the same things that contribute to the swim bladder are analogous to our lungs.”

 

 

 

]]>
/news/2013/01/17/sun-journal-profiles-bio-professor-williams-and-her-zeal-for-zebrafish/feed/ 0